STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1918PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: mca:MCA2849 potassium transporter peripheral membrane component. (224 aa)    
Predicted Functional Partners:
Xcel_1917
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: cja:CJA_3579 trk system potassium uptake protein TrkA.
 
  
 0.965
Xcel_1916
KEGG: bsu:BSU04320 hypothetical protein.
 
   
 0.879
Xcel_0429
H(+)-transporting two-sector ATPase; PFAM: cation transporter; KEGG: azo:azo3092 putative potassium uptake protein, membrane component.
  
 
 0.834
Xcel_1920
PFAM: nucleic acid binding OB-fold tRNA/helicase- type.
  
     0.739
Xcel_1723
PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: gme:Gmet_0066 Fmu, rRNA SAM-dependent methyltransferase:Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
   0.661
Xcel_1817
TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin biosynthesis MoaE protein; molybdopterin binding domain; KEGG: sus:Acid_1403 molybdopterin adenylyltransferase.
  
    0.627
Xcel_1813
PFAM: Uroporphyrinogen III synthase HEM4; transcriptional regulator domain protein; KEGG: scl:sce6449 putative transcriptional regulator.
 
    0.576
Xcel_3253
Uroporphyrinogen-III synthase-like protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
    0.493
Xcel_1647
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: tmz:Tmz1t_1159 ATPase, P-type (transporting), HAD superfamily, subfamily IC.
  
  
 0.420
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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