STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1919KEGG: ade:Adeh_2996 hypothetical protein. (260 aa)    
Predicted Functional Partners:
Xcel_1921
Hypothetical protein.
 
     0.834
Xcel_1920
PFAM: nucleic acid binding OB-fold tRNA/helicase- type.
       0.819
Xcel_2423
Hypothetical protein; KEGG: vco:VC0395_A1354 HlyD family secretion protein.
  
     0.637
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
       0.615
ssuB
ABC transporter related protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
  
  
 0.563
Xcel_0434
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce0167 ABC transporter ATP-binding protein.
  
  
 0.563
Xcel_0713
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0826 ABC transporter, ATPase subunit.
  
  
 0.563
Xcel_1186
Hypothetical protein.
  
     0.543
Xcel_1923
Hypothetical protein.
       0.529
Xcel_0425
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: bur:Bcep18194_B1761 ABC transporter, substrate-binding protein, aliphatic sulphonates.
  
  
 0.515
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.