STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1924Hypothetical protein. (99 aa)    
Predicted Functional Partners:
rbpA-2
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.775
Xcel_1741
SMART: regulatory protein MerR; KEGG: afw:Anae109_4225 MerR family transcriptional regulator.
  
     0.772
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
     0.766
Xcel_1890
Hypothetical protein.
  
     0.758
Xcel_1290
PFAM: protein of unknown function YGGT; KEGG: bbk:BARBAKC583_0327 YGGT family protein.
  
     0.755
Xcel_2131
Hypothetical protein.
  
     0.753
Xcel_2036
KEGG: hypothetical protein.
  
     0.743
Xcel_2022
Hypothetical protein.
  
     0.733
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.731
Xcel_1677
PFAM: protein of unknown function DUF349; KEGG: mxa:MXAN_1429 response regulator receiver domain/DnaJ domain protein.
  
     0.720
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.