STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1928PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: pen:PSEEN2266 hypothetical protein. (294 aa)    
Predicted Functional Partners:
Xcel_1927
Hypothetical protein; KEGG: ade:Adeh_1135 serine/threonine protein kinase.
       0.689
Xcel_2768
PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: mxa:MXAN_1554 iron-sulfur cluster-binding protein, Rieske family.
  
 
 0.491
Xcel_1925
PFAM: inositol monophosphatase; KEGG: mxa:MXAN_1914 inositol-1-monophosphatase.
  
    0.485
Xcel_1926
PFAM: protein of unknown function UPF0126; KEGG: rpa:RPA2993 hypothetical protein.
       0.476
Xcel_2370
PFAM: GCN5-related N-acetyltransferase; KEGG: rce:RC1_0257 puromycin N-acetyltransferase, putative.
 
   0.406
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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