STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1932PFAM: GCN5-related N-acetyltransferase; KEGG: dal:Dalk_1024 acetyl coenzyme A synthetase (ADP forming), alpha domain protein. (907 aa)    
Predicted Functional Partners:
Xcel_1931
Hypothetical protein.
     0.848
Xcel_0693
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.750
Xcel_0430
PFAM: histone deacetylase superfamily; KEGG: bsu:BSU29710 acetoin dehydrogenase.
 
     0.725
Xcel_1930
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; PglZ domain protein; KEGG: tbd:Tbd_1468 hypothetical protein.
 
     0.695
Xcel_2405
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: apa:APP7_1068 alcohol dehydrogenase / acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
 
   
 0.620
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
   0.605
Xcel_1899
IMP dehydrogenase family protein; KEGG: afw:Anae109_3133 inositol-5-monophosphate dehydrogenase; TIGRFAM: IMP dehydrogenase family protein; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein.
   
   0.605
Xcel_2550
KEGG: met:M446_5306 hypothetical protein.
 
   
 0.593
tdk
PFAM: thymidine kinase; KEGG: swi:Swit_3814 thymidine kinase.
  
    0.591
Xcel_1934
DNA topoisomerase (ATP-hydrolyzing); KEGG: sus:Acid_3975 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A.
       0.573
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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