STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1967PFAM: regulatory protein TetR; KEGG: mxa:MXAN_1727 transcriptional regulator, TetR family. (198 aa)    
Predicted Functional Partners:
Xcel_1968
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rde:RD1_1973 ABC transporter, ATP-binding protein, putative.
 
     0.867
Xcel_0381
Hypothetical protein; KEGG: mpt:Mpe_A2047 ABC transporter, permease protein.
  
     0.652
Xcel_3197
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: bcj:BCAM1981 LuxR superfamily regulatory protein.
  
     0.631
Xcel_3160
PFAM: TAP domain protein; alpha/beta hydrolase fold; KEGG: bph:Bphy_7397 TAP domain-containing protein.
  
     0.548
Xcel_0137
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: mpo:Mpop_3746 multi-sensor signal transduction histidine kinase.
  
     0.481
Xcel_1590
PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related.
  
     0.479
Xcel_3055
PFAM: periplasmic binding protein; KEGG: bha:BH1037 iron (III) dicitrate transport system (permease).
  
     0.476
Xcel_1966
PFAM: protein of unknown function DUF805; KEGG: jan:Jann_3908 hypothetical protein.
       0.472
Xcel_2431
Hypothetical protein.
  
     0.453
Xcel_1823
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: mes:Meso_2457 transcriptional regulator, LuxR family.
  
     0.446
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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