STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1970PFAM: protein of unknown function DUF156; KEGG: sat:SYN_00719 putative cytoplasmic protein. (97 aa)    
Predicted Functional Partners:
Xcel_1969
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: aha:AHA_1691 NADH dehydrogenase.
 
     0.851
Xcel_1971
KEGG: hypothetical protein.
 
     0.834
Xcel_1968
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rde:RD1_1973 ABC transporter, ATP-binding protein, putative.
       0.594
Xcel_3258
PFAM: Heavy metal transport/detoxification protein; KEGG: rso:RSc3349 hypothetical protein.
 
  
 0.481
Xcel_1967
PFAM: regulatory protein TetR; KEGG: mxa:MXAN_1727 transcriptional regulator, TetR family.
       0.434
pheT
KEGG: ade:Adeh_1971 phenylalanyl-tRNA synthetase beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit.
     
 0.419
Xcel_3259
TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bpy:Bphyt_6893 heavy metal translocating P- type ATPase.
 
  
 0.405
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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