STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1981PFAM: RDD domain containing protein; KEGG: aav:Aave_4623 RDD domain containing protein. (357 aa)    
Predicted Functional Partners:
Xcel_0188
PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: cvi:CV_2787 ribosome-associated heat shock protein HSP15.
  
    0.691
Xcel_1403
PFAM: ANTAR domain protein; KEGG: met:M446_0827 signal transduction histidine kinase.
  
    0.595
Xcel_1980
PFAM: Dicarboxylate carrier MatC domain protein; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: xcb:XC_0579 dicarboxylate carrier protein.
       0.547
Xcel_3193
KEGG: bcb:BCB4264_A4969 hypothetical protein.
  
     0.521
Xcel_2521
PFAM: protein of unknown function DUF95 transmembrane; KEGG: mxa:MXAN_3115 hypothetical protein.
 
    0.500
Xcel_2075
PFAM: 4-oxalocrotonate tautomerase; KEGG: scl:sce1309 hypothetical protein.
  
     0.454
Xcel_0157
Hypothetical protein.
  
     0.445
Xcel_1401
Putative PAS/PAC sensor protein; PFAM: ANTAR domain protein; PAS fold-3 domain protein; KEGG: met:M446_3030 multi-sensor hybrid histidine kinase.
  
    0.434
Xcel_2511
Hypothetical protein; KEGG: scl:sce4824 HlyD family secretion protein.
  
    0.420
Xcel_1987
Hypothetical protein.
  
     0.410
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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