STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1985KEGG: scl:sce5148 hypothetical protein. (136 aa)    
Predicted Functional Partners:
Xcel_1984
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mxa:MXAN_5410 RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.942
Xcel_2234
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: aba:Acid345_4453 putative sigma factor, ECF subfamily.
 
     0.590
Xcel_2235
PFAM: YCII-related; KEGG: kpn:KPN_pKPN5p08203 integrase.
  
     0.552
Xcel_3279
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: afw:Anae109_4037 RNA polymerase factor sigma- 70; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.552
Xcel_1986
KEGG: bba:Bd1307 hypothetical protein.
       0.524
Xcel_1987
Hypothetical protein.
       0.524
Xcel_1982
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: bcb:BCB4264_A3005 DNA-binding protein.
       0.519
Xcel_1983
Hypothetical protein; KEGG: bcr:BCAH187_C0217 YoaS.
       0.519
Xcel_2236
PFAM: YCII-related; KEGG: rle:RL1476 DGPFAETKE domain-containing protein.
  
     0.475
Xcel_0121
Hypothetical protein; KEGG: bcz:BCZK0153 hydrolase.
  
     0.409
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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