STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2003PFAM: AMP-dependent synthetase and ligase; KEGG: afw:Anae109_0968 AMP-dependent synthetase and ligase. (606 aa)    
Predicted Functional Partners:
Xcel_1973
PFAM: AMP-dependent synthetase and ligase; KEGG: sfu:Sfum_0108 AMP-dependent synthetase and ligase.
 
 
0.849
Xcel_1122
PFAM: AMP-dependent synthetase and ligase; KEGG: ank:AnaeK_1524 AMP-dependent synthetase and ligase.
  
  
 
0.805
Xcel_1856
PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_2959 putative long-chain-fatty-acid-- CoA ligase.
  
  
 
0.803
Xcel_3111
PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: mxa:MXAN_6432 putative acyl-CoA dehydrogenase.
 
 0.702
Xcel_0223
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: bur:Bcep18194_B1396 acyl-CoA dehydrogenase.
 
 0.681
Xcel_1042
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: pmy:Pmen_0898 acyl-CoA dehydrogenase domain- containing protein.
 
 0.676
Xcel_2004
KEGG: dar:Daro_1907 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein; SMART: Exonuclease; Excinuclease ABC C subunit domain protein.
       0.659
Xcel_2102
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: bha:BH1130 butyryl-CoA dehydrogenase.
 
 0.628
Xcel_2286
PFAM: Acyl-CoA dehydrogenase type 2 domain; acyl- CoA dehydrogenase domain protein; KEGG: acyl-CoA dehydrogenase.
  
 0.628
Xcel_2005
PFAM: regulatory protein AsnC/Lrp family; KEGG: dps:DP0751 transcription regulator.
       0.618
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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