Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Xcel_2009PFAM: cytochrome c class I; KEGG: tbd:Tbd_2545 putative cytochrome c. (259 aa)    
Predicted Functional Partners:
Xcel_2008
PFAM: cytochrome c oxidase subunit III; KEGG: amc:MADE_03910 cytochrome o ubiquinol oxidase subunit III (ubiquinol oxidase chain C).
 
 
 0.999
Xcel_2010
PFAM: Rieske [2Fe-2S] domain protein; KEGG: vei:Veis_4950 Rieske (2Fe-2S) domain protein.
 
 0.999
Xcel_2011
PFAM: Cytochrome b/b6 domain; KEGG: sus:Acid_6208 cytochrome b/b6 domain- containing protein.
 
 0.999
Xcel_2016
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; KEGG: pfl:PFL_0061 cytochrome c oxidase, subunit II.
 
 
 0.993
Xcel_2014
Hypothetical protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
 
 
 
 0.990
Xcel_2015
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
 
 0.984
Xcel_2768
PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: mxa:MXAN_1554 iron-sulfur cluster-binding protein, Rieske family.
  
 
 0.955
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.888
Xcel_3220
PFAM: copper resistance D domain protein; KEGG: bha:BH0892 hypothetical protein.
 
  
 0.870
nuoI
NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.845
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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