Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Xcel_2017TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: cja:CJA_0888 HesB/YadR/YfhF family protein; Belongs to the HesB/IscA family. (116 aa)    
Predicted Functional Partners:
Xcel_1362
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: ade:Adeh_0847 SUF system FeS assembly protein.
  
 
 0.821
Xcel_3028
TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: aba:Acid345_2628 glycine cleavage T protein, aminomethyl transferase; Belongs to the GcvT family.
 
 
 0.808
Xcel_0347
PFAM: aminotransferase class V; KEGG: gbm:Gbem_1583 aminotransferase class V.
 
 
 0.740
Xcel_2409
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dvm:DvMF_2659 cysteine desulfurase NifS.
 
 
 0.729
Xcel_2487
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase central region; dehydrogenase E1 component; catalytic domain of components of various dehydrogenase complexes; KEGG: sus:Acid_5307 alpha-ketoglutarate decarboxylase.
  
  
 0.720
Xcel_2015
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
     0.630
Xcel_2016
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; KEGG: pfl:PFL_0061 cytochrome c oxidase, subunit II.
 
    0.624
Xcel_2018
KEGG: mpt:Mpe_B0328 hypothetical protein.
       0.610
Xcel_2439
TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin; KEGG: rec:RHECIAT_CH0003991 glutaredoxin protein.
  
  
 0.546
Xcel_1360
KEGG: bcr:BCAH187_A5123 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.536
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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