STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2036KEGG: hypothetical protein. (241 aa)    
Predicted Functional Partners:
Xcel_2022
Hypothetical protein.
 
     0.791
Xcel_1741
SMART: regulatory protein MerR; KEGG: afw:Anae109_4225 MerR family transcriptional regulator.
  
     0.763
Xcel_1921
Hypothetical protein.
  
     0.757
Xcel_1924
Hypothetical protein.
  
     0.743
rbpA-2
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.729
lipA
Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
       0.728
Xcel_1677
PFAM: protein of unknown function DUF349; KEGG: mxa:MXAN_1429 response regulator receiver domain/DnaJ domain protein.
  
     0.666
Xcel_1996
Hypothetical protein.
  
     0.636
Xcel_1186
Hypothetical protein.
  
     0.628
Xcel_1476
KEGG: hypothetical protein.
  
     0.623
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.