STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2037PFAM: RDD domain containing protein. (151 aa)    
Predicted Functional Partners:
Xcel_3220
PFAM: copper resistance D domain protein; KEGG: bha:BH0892 hypothetical protein.
  
     0.685
Xcel_2038
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: afw:Anae109_4400 glutamine synthetase, type I.
  
 
 0.659
Xcel_0702
KEGG: mxa:MXAN_7409 hypothetical protein.
  
     0.653
Xcel_2014
Hypothetical protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.645
Xcel_2009
PFAM: cytochrome c class I; KEGG: tbd:Tbd_2545 putative cytochrome c.
  
     0.621
Xcel_2036
KEGG: hypothetical protein.
 
     0.559
Xcel_0780
PFAM: UvrD/REP helicase; KEGG: acr:Acry_0218 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
     0.496
Xcel_2022
Hypothetical protein.
  
     0.461
Xcel_0446
PFAM: ResB family protein; KEGG: dal:Dalk_1265 ResB family protein.
  
     0.434
Xcel_0600
PFAM: MaoC domain protein dehydratase; KEGG: mxa:MXAN_4672 MaoC domain protein.
  
    0.434
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.