STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2052PFAM: CsbD family protein; KEGG: hypothetical protein. (61 aa)    
Predicted Functional Partners:
Xcel_1298
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
  
    0.715
Xcel_2262
PFAM: protein of unknown function DUF1458; KEGG: jan:Jann_3624 hypothetical protein.
   
    0.633
Xcel_0164
KEGG: mpt:Mpe_A2206 hypothetical protein.
  
    0.565
Xcel_0165
Acetyltransferase-like protein; KEGG: psa:PST_4142 predicted acetyltransferase.
  
    0.565
Xcel_1516
PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: dol:Dole_3066 hypothetical protein.
   
    0.529
Xcel_0385
PFAM: Transglycosylase-associated protein; KEGG: yen:YE2879 hypothetical protein.
  
  
 0.516
Xcel_1543
PFAM: OsmC family protein; KEGG: acr:Acry_2755 OsmC family protein.
  
  
 0.511
Xcel_3017
PFAM: OsmC family protein; KEGG: oan:Oant_0956 OsmC family protein.
  
  
 0.511
Xcel_0767
Hypothetical protein; KEGG: GI17572 gene product from transcript GI17572- RA.
  
  
 0.503
Xcel_2572
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3354 ABC transporter related.
  
    0.502
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.