STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2063Hypothetical protein; KEGG: rsh:Rsph17029_3318 HK97 family phage major capsid protein. (430 aa)    
Predicted Functional Partners:
Xcel_2532
PFAM: glycoside hydrolase family 28; SMART: Parallel beta-helix repeat; KEGG: sus:Acid_1250 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 28 family.
  
 
 0.715
Xcel_0540
TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; KEGG: sit:TM1040_0803 phage putative head morphogenesis protein, SPP1 gp7.
  
 
 0.710
Xcel_0519
PFAM: Tail Collar domain protein; KEGG: mrd:Mrad2831_5676 tail collar domain- containing protein.
   
   0.585
Xcel_1948
PFAM: Collagen triple helix repeat; KEGG: hypothetical protein.
   
   0.585
Xcel_2440
Beta-galactosidase; KEGG: mxa:MXAN_6555 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1; Belongs to the glycosyl hydrolase 1 family.
   
   0.569
Xcel_2614
Beta-galactosidase; KEGG: scl:sce4297 Beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1; Belongs to the glycosyl hydrolase 1 family.
   
   0.569
Xcel_1822
PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2806 nitrite extrusion protein.
   
    0.491
Xcel_1828
PFAM: major facilitator superfamily MFS_1; KEGG: sus:Acid_2929 major facilitator transporter.
   
    0.491
Xcel_2044
PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_2593 major facilitator transporter.
   
    0.491
Xcel_2062
Hypothetical protein.
       0.485
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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