STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2079PFAM: regulatory protein TetR; KEGG: bcb:BCB4264_A4968 transcriptional regulator, TetR family domain protein. (208 aa)    
Predicted Functional Partners:
Xcel_2081
PFAM: membrane-flanked domain; KEGG: bha:BH1721 hypothetical protein.
 
     0.848
Xcel_2080
PFAM: membrane-flanked domain; KEGG: xac:XAC3793 hypothetical protein.
 
     0.841
Xcel_2082
PFAM: protein of unknown function DUF328; KEGG: rsh:Rsph17029_0026 hypothetical protein; Belongs to the UPF0246 family.
       0.645
Xcel_2078
KEGG: pla:Plav_2389 hypothetical protein.
       0.613
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.