STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2114PFAM: extracellular solute-binding protein family 1; KEGG: cvi:CV_2897 sugar ABC transporter periplasmic sugar-binding protein. (428 aa)    
Predicted Functional Partners:
Xcel_2115
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_5336 binding-protein-dependent transport systems inner membrane component.
 
 0.994
Xcel_2116
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_0260 sugar ABC transporter permease.
 
 
 0.931
Xcel_1047
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lch:Lcho_3327 binding-protein-dependent transport systems inner membrane component.
  
 
 0.668
Xcel_1369
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_3397 binding-protein-dependent transport systems inner membrane component.
  
 
 0.668
Xcel_2795
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: noc:Noc_0280 ABC transporter, inner membrane subunit.
  
 
 0.668
Xcel_2117
PFAM: protein of unknown function DUF187; KEGG: oan:Oant_1822 protein of unknown function DUF187.
 
     0.632
Xcel_0064
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1942 sugar ABC transporter, permease protein.
 
 
 0.631
Xcel_1642
PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_4522 hypothetical protein.
  
     0.615
Xcel_2126
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: smd:Smed_4641 oxidoreductase domain protein.
 
     0.584
Xcel_0065
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1924 sugar ABC transporter, permease protein.
 
 
 0.571
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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