STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2117PFAM: protein of unknown function DUF187; KEGG: oan:Oant_1822 protein of unknown function DUF187. (806 aa)    
Predicted Functional Partners:
Xcel_2120
KEGG: pzu:PHZ_c1045 hypothetical protein.
 
     0.881
Xcel_2118
PFAM: glycoside hydrolase clan GH-D; KEGG: kpn:KPN_04203 putative glycoprotein.
       0.773
Xcel_2119
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: hypothetical protein; K01187 alpha- glucosidase.
       0.773
Xcel_2121
PFAM: ROK family protein; KEGG: gur:Gura_2075 ROK family protein.
       0.752
Xcel_2123
N-acylglucosamine-6-phosphate 2-epimerase; PFAM: putative N-acetylmannosamine-6-phosphate epimerase; deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: esa:ESA_00529 N-acetylmannosamine-6-phosphate 2-epimerase.
 
     0.689
Xcel_2122
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bha:BH0419 GntR family transcriptional regulator.
     
 0.684
Xcel_2114
PFAM: extracellular solute-binding protein family 1; KEGG: cvi:CV_2897 sugar ABC transporter periplasmic sugar-binding protein.
 
     0.632
Xcel_2115
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_5336 binding-protein-dependent transport systems inner membrane component.
 
     0.601
Xcel_2116
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_0260 sugar ABC transporter permease.
 
     0.600
Xcel_2125
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sus:Acid_5142 oxidoreductase domain- containing protein.
 
     0.518
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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