STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2122Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bha:BH0419 GntR family transcriptional regulator. (244 aa)    
Predicted Functional Partners:
Xcel_2442
N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: gdi:GDI2579 putative N-acetylglucosamine-6- phosphate deacetylase.
 
  
 0.755
Xcel_1638
Putative transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bcr:BCAH187_A4375 hypothetical protein.
   
  
 0.713
Xcel_2121
PFAM: ROK family protein; KEGG: gur:Gura_2075 ROK family protein.
  
  
 0.706
Xcel_2119
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: hypothetical protein; K01187 alpha- glucosidase.
  
  
 0.702
Xcel_2120
KEGG: pzu:PHZ_c1045 hypothetical protein.
       0.693
Xcel_2117
PFAM: protein of unknown function DUF187; KEGG: oan:Oant_1822 protein of unknown function DUF187.
     
 0.684
Xcel_2118
PFAM: glycoside hydrolase clan GH-D; KEGG: kpn:KPN_04203 putative glycoprotein.
  
    0.683
Xcel_2641
KEGG: mxa:MXAN_5221 hypothetical protein.
  
    0.677
Xcel_2242
TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; KEGG: oriC; transcriptional regulator LysR family; K05596 LysR family transcriptional regulator, chromosome initiation inhibitor.
   
  
 0.660
Xcel_2123
N-acylglucosamine-6-phosphate 2-epimerase; PFAM: putative N-acetylmannosamine-6-phosphate epimerase; deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: esa:ESA_00529 N-acetylmannosamine-6-phosphate 2-epimerase.
 
     0.613
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.