STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2124PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rde:RD1_0217 myo-inositol dehydrogenase. (337 aa)    
Predicted Functional Partners:
Xcel_2126
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: smd:Smed_4641 oxidoreductase domain protein.
 
     0.945
Xcel_2125
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sus:Acid_5142 oxidoreductase domain- containing protein.
 
    
0.840
Xcel_2123
N-acylglucosamine-6-phosphate 2-epimerase; PFAM: putative N-acetylmannosamine-6-phosphate epimerase; deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: esa:ESA_00529 N-acetylmannosamine-6-phosphate 2-epimerase.
  
    0.763
Xcel_2700
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: lch:Lcho_1398 glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.702
Xcel_1373
PFAM: oxidoreductase domain protein; KEGG: probable myo-inositol dehydrogenase.
  
     0.576
Xcel_2122
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bha:BH0419 GntR family transcriptional regulator.
  
    0.545
Xcel_2120
KEGG: pzu:PHZ_c1045 hypothetical protein.
 
     0.539
Xcel_2127
PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4- dehydrorhamnose reductase; KEGG: gur:Gura_1654 NAD-dependent epimerase/dehydratase.
  
    0.480
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dvl:Dvul_0888 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.479
Xcel_2033
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: psp:PSPPH_3186 Gfo/Idh/MocA family oxidoreductase.
  
     0.477
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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