STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2126PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: smd:Smed_4641 oxidoreductase domain protein. (397 aa)    
Predicted Functional Partners:
Xcel_2124
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rde:RD1_0217 myo-inositol dehydrogenase.
 
     0.945
Xcel_2125
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sus:Acid_5142 oxidoreductase domain- containing protein.
 
     0.945
Xcel_2123
N-acylglucosamine-6-phosphate 2-epimerase; PFAM: putative N-acetylmannosamine-6-phosphate epimerase; deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: esa:ESA_00529 N-acetylmannosamine-6-phosphate 2-epimerase.
 
    0.794
Xcel_2113
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: mes:Meso_4484 oxidoreductase-like.
 
     0.714
Xcel_2114
PFAM: extracellular solute-binding protein family 1; KEGG: cvi:CV_2897 sugar ABC transporter periplasmic sugar-binding protein.
 
     0.584
Xcel_0895
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rle:RL0087 hypothetical protein.
 
    0.562
Xcel_2120
KEGG: pzu:PHZ_c1045 hypothetical protein.
 
     0.556
Xcel_2700
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: lch:Lcho_1398 glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.553
Xcel_2397
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: vei:Veis_3268 xylose isomerase domain protein TIM barrel.
 
    0.550
Xcel_2122
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bha:BH0419 GntR family transcriptional regulator.
  
    0.545
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.