STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2134Putative transcriptional regulator, PucR family; KEGG: reu:Reut_B5661 CdaR family transcriptional regulator. (394 aa)    
Predicted Functional Partners:
Xcel_2135
(Acyl-carrier-protein) S-malonyltransferase; PFAM: Acyl transferase; KEGG: sml:Smlt1028 putative malonyl CoA-acyl carrier protein transacylase.
 
   
 0.820
acpP
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
 
   
 0.707
fabH
3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
 
     0.682
Xcel_0600
PFAM: MaoC domain protein dehydratase; KEGG: mxa:MXAN_4672 MaoC domain protein.
  
     0.672
Xcel_0599
KEGG: ade:Adeh_4038 MaoC-like dehydratase; Belongs to the UPF0336 family.
  
     0.633
Xcel_2133
Hypothetical protein; KEGG: aba:Acid345_2688 TPR repeat protein.
       0.505
Xcel_2545
Hypothetical protein; KEGG: DSG4; desmoglein 4; K07599 desmoglein 4.
  
     0.480
Xcel_2138
Beta-ketoacyl synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
       0.467
Xcel_3260
PFAM: Abortive infection protein; KEGG: dal:Dalk_0566 abortive infection protein.
  
     0.455
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.442
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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