STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2142Hypothetical protein. (166 aa)    
Predicted Functional Partners:
Xcel_2544
Hypothetical protein.
  
     0.741
Xcel_1924
Hypothetical protein.
  
     0.691
Xcel_2196
Hypothetical protein.
  
     0.690
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.615
Xcel_1890
Hypothetical protein.
  
     0.599
Xcel_1238
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: lch:Lcho_0165 XRE family transcriptional regulator.
  
     0.583
Xcel_1741
SMART: regulatory protein MerR; KEGG: afw:Anae109_4225 MerR family transcriptional regulator.
  
     0.583
def-3
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.541
Xcel_2736
PFAM: glycosyl transferase family 39; KEGG: mca:MCA2192 dolichyl-phosphate-mannose- protein mannosyltransferase family protein.
  
     0.531
Xcel_1291
PFAM: DivIVA family protein; KEGG: bha:BH2546 cell-division initiation protein (septum placement).
  
    0.509
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.