Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2146Hypothetical protein. (169 aa)    
Predicted Functional Partners:
Xcel_1661
Hypothetical protein.
  
     0.741
Xcel_3367
KEGG: similar to MGC139263 protein.
  
     0.721
Xcel_0273
KEGG: hch:HCH_01581 hypothetical protein.
  
     0.714
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
   0.672
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
  
 0.651
Xcel_3244
KEGG: ank:AnaeK_2924 hypothetical protein.
  
     0.623
Xcel_1732
Hypothetical protein.
  
     0.610
Xcel_2360
PFAM: membrane-flanked domain; KEGG: xac:XAC2552 cell division protein.
  
     0.596
Xcel_3276
KEGG: mrd:Mrad2831_1188 hypothetical protein.
  
     0.592
Xcel_2547
KEGG: hypothetical protein.
  
     0.582
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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