STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2170PFAM: ABC-3 protein; KEGG: gbm:Gbem_3532 ABC-3 protein. (312 aa)    
Predicted Functional Partners:
Xcel_2169
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsq:Rsph17025_3153 hypothetical protein.
 0.999
Xcel_2168
PFAM: periplasmic solute binding protein; KEGG: rce:RC1_3161 high-affinity zinc uptake system protein ZnuA.
 
 
 0.998
Xcel_1859
PFAM: periplasmic solute binding protein; KEGG: bha:BH2760 hypothetical protein.
 
 
 0.991
Xcel_2171
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: mxa:MXAN_3702 transcriptional regulator, Fur family; Belongs to the Fur family.
  
  
 0.917
Xcel_2174
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3413 ABC Fe+3-siderophore transporter, ATPase subunit.
    
 0.722
Xcel_0222
TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: bcb:BCB4264_A1874 transport protein, NRAMP family.
  
  
 0.711
Xcel_2172
PFAM: transport system permease protein; KEGG: oan:Oant_4083 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
     
 0.701
Xcel_2173
PFAM: transport system permease protein; KEGG: transport system permease protein precursor; K02015 iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.686
glyQS
glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.586
Xcel_2175
PFAM: periplasmic binding protein; KEGG: rsq:Rsph17025_3331 transport system permease protein.
     
 0.500
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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