STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2202PFAM: protein of unknown function DUF1503. (250 aa)    
Predicted Functional Partners:
Xcel_1225
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: xop:PXO_03585 transcriptional regulator.
   
 
 0.532
Xcel_1757
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: xac:XAC0188 transcriptional regulator.
   
 
 0.532
Xcel_2109
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bxe:Bxe_B2769 XRE family transcriptional regulator.
   
 
 0.532
Xcel_2883
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ccs:CCNA_00479 transcriptional regulatory protein.
   
 
 0.532
Xcel_3240
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sal:Sala_1613 XRE family transcriptional regulator.
   
 
 0.532
Xcel_2201
KEGG: ade:Adeh_0026 hypothetical protein.
       0.526
Xcel_1642
PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_4522 hypothetical protein.
  
     0.504
Xcel_3277
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: rlt:Rleg2_5436 transcriptional regulator, LuxR family.
  
     0.497
Xcel_1923
Hypothetical protein.
  
     0.455
Xcel_3007
KEGG: fibrocystin-L-like protein.
 
     0.452
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.