STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2218Acetyltransferase; KEGG: scl:sce0310 acetyltransferase. (429 aa)    
Predicted Functional Partners:
Xcel_2211
TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: bsu:BSU25590 unspecific high-affinity DNA- binding protein.
  
    0.700
whiB-3
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
  
 0.668
Xcel_2217
PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: xau:Xaut_3313 protein of unknown function DUF853 NPT hydrolase putative.
       0.625
Xcel_1340
Hemolysin A; KEGG: mex:Mext_4311 hemolysin A; TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein.
      
 0.620
Xcel_0082
KEGG: hypothetical protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
  
  
 0.601
Xcel_0867
KEGG: yen:YE2035 putative membrane transport protein.
   
    0.592
Xcel_2820
PFAM: major facilitator superfamily MFS_1; KEGG: jan:Jann_0419 major facilitator transporter.
   
    0.592
Xcel_2847
PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: bpy:Bphyt_5813 major facilitator superfamily MFS_1.
   
    0.592
Xcel_2848
PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: bpy:Bphyt_5813 major facilitator superfamily MFS_1.
   
    0.592
Xcel_1788
PFAM: protein of unknown function DUF58; KEGG: mxa:MXAN_2474 hypothetical protein.
  
     0.577
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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