STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2220Conserved hypothetical protein; KEGG: xca:xccb100_4377 putative ATP-binding protein. (1120 aa)    
Predicted Functional Partners:
Xcel_2222
KEGG: xac:XAC4301 hypothetical protein.
 
   0.993
Xcel_2221
KEGG: xop:PXO_03538 hypothetical protein.
 
 
   0.983
Xcel_1179
PFAM: Peptidase M23; KEGG: rce:RC1_1037 peptidoglycan-binding LysM.
  
   0.832
Xcel_2227
PFAM: metallophosphoesterase; KEGG: serine/threonine-protein kinase C.
 
     0.636
leuS
TIGRFAM: leucyl-tRNA synthetase; KEGG: hypothetical protein; K01869 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.623
Xcel_1507
PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll4342 phosphinotricin acetyltransferase.
  
     0.568
Xcel_2931
Hypothetical protein; KEGG: GF17743 gene product from transcript GF17743- RA.
 
     0.520
Xcel_2219
Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
       0.497
Xcel_0708
Phage shock protein C, PspC; PFAM: PspC domain protein; KEGG: swi:Swit_2762 hypothetical protein.
  
     0.433
Xcel_1727
TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: glo:Glov_1750 riboflavin synthase, alpha subunit.
      
 0.428
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.