STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2226PFAM: iron dependent repressor; regulatory protein GntR HTH; FeoA family protein; SMART: iron dependent repressor; KEGG: tcx:Tcr_0904 iron dependent repressor. (240 aa)    
Predicted Functional Partners:
Xcel_2227
PFAM: metallophosphoesterase; KEGG: serine/threonine-protein kinase C.
       0.768
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
    0.687
Xcel_1996
Hypothetical protein.
   
    0.687
Xcel_2242
TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; KEGG: oriC; transcriptional regulator LysR family; K05596 LysR family transcriptional regulator, chromosome initiation inhibitor.
  
 
 0.685
Xcel_2595
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bcy:Bcer98_3735 cell envelope-related transcriptional attenuator.
   
    0.609
Xcel_2225
PFAM: major facilitator superfamily MFS_1; KEGG: bid:Bind_2119 major facilitator transporter.
       0.607
Xcel_1429
PFAM: band 7 protein; SMART: band 7 protein; KEGG: sfu:Sfum_2310 band 7 protein.
   
    0.589
Xcel_2224
PFAM: aldo/keto reductase; KEGG: hypothetical protein.
       0.588
Xcel_1094
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bvi:Bcep1808_4394 GntR family transcriptional regulator.
   
    0.553
Xcel_2355
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sus:Acid_1594 GntR family transcriptional regulator.
   
    0.553
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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