STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2234Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: aba:Acid345_4453 putative sigma factor, ECF subfamily. (436 aa)    
Predicted Functional Partners:
Xcel_2235
PFAM: YCII-related; KEGG: kpn:KPN_pKPN5p08203 integrase.
 
     0.950
Xcel_2236
PFAM: YCII-related; KEGG: rle:RL1476 DGPFAETKE domain-containing protein.
 
     0.950
Xcel_1985
KEGG: scl:sce5148 hypothetical protein.
 
     0.590
Xcel_2237
KEGG: GP1; vegetative cell wall protein gp1.
       0.541
Xcel_2238
PFAM: peptidase M24; KEGG: pzu:PHZ_c2239 twin-arginine translocation pathway signal.
       0.471
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.