STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2251KEGG: hypothetical protein. (393 aa)    
Predicted Functional Partners:
Xcel_2499
Hypothetical protein; KEGG: GK23094 gene product from transcript GK23094- RA.
  
 
 0.963
Xcel_2249
PFAM: Phosphoglycerate mutase; KEGG: afr:AFE_0621 phosphoglycerate mutase family protein.
       0.781
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
       0.781
nadD
Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
       0.780
Xcel_2253
Hypothetical protein.
       0.773
Xcel_1103
Hypothetical protein; KEGG: GH10507 gene product from transcript GH10507- RA.
 
 
   0.707
Xcel_3007
KEGG: fibrocystin-L-like protein.
  
     0.706
Xcel_0844
PFAM: SAF domain protein; KEGG: xop:PXO_01713 periplasmic protease.
  
  
 0.658
Xcel_1263
PFAM: Stage II sporulation E family protein; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein; KEGG: gbm:Gbem_0731 response regulator receiver modulated serine phosphatase.
 
 
 0.637
Xcel_0171
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: GH10507 gene product from transcript GH10507- RA.
  
   
 0.635
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.