STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2266TIGRFAM: ribonuclease, Rne/Rng family; SMART: RNA binding S1 domain protein; KEGG: dds:Ddes_0791 ribonuclease, Rne/Rng family. (1043 aa)    
Predicted Functional Partners:
pnp
Guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.952
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
    
 
 0.860
Xcel_1545
Conserved hypothetical protein; Displays ATPase and GTPase activities.
   
 
 0.803
Xcel_0292
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: mno:Mnod_7234 DEAD/DEAH box helicase domain protein.
    
 
 0.731
Xcel_0774
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: dps:DP1690 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
    
 
 0.731
Xcel_1733
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: smt:Smal_1225 DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family.
    
 
 0.731
Xcel_3375
PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: bha:BH4063 spoIIIJ-associated protein.
   
   0.726
Xcel_1168
RNA-binding protein (KH domain); KEGG: bha:BH2482 hypothetical protein; Belongs to the UPF0109 family.
    
   0.694
tdk-2
PFAM: thymidine kinase; KEGG: bba:Bd3420 thymidine kinase.
       0.682
Xcel_0927
PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: bha:BH2629 hypothetical protein.
  
    0.614
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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