STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2280PFAM: Dak phosphatase; KEGG: bca:BCE_3898 phosphatase, putative. (553 aa)    
Predicted Functional Partners:
Xcel_2216
TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: dvl:Dvul_1226 DegV family protein.
 
 0.952
Xcel_2279
ATP-dependent DNA helicase RecG; KEGG: mrd:Mrad2831_1662 DEAD/DEAH box helicase domain-containing protein; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicase; helicase domain protein.
 
    0.921
Xcel_2278
TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: met:M446_6054 methyltransferase.
 
     0.715
Xcel_2276
Hypothetical protein; KEGG: yen:YE2933 cell envelope integrity inner membrane protein TolA.
 
     0.622
Xcel_3145
TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: csa:Csal_0794 HAD-superfamily hydrolase, subfamily IIA; Belongs to the HAD-like hydrolase superfamily.
      
 0.594
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: aba:Acid345_0165 LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
       0.575
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.561
Xcel_1342
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
    0.482
Xcel_3000
PFAM: NLP/P60 protein; KEGG: bte:BTH_II0129 rhs element Vgr protein.
  
   
 0.424
Xcel_1997
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: bha:BH2504 serine/threonine protein kinase.
 
    0.415
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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