STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2309PFAM: periplasmic binding protein; KEGG: abm:ABSDF1953 iron ABC transporter periplasmic substrate-binding protein. (358 aa)    
Predicted Functional Partners:
Xcel_2306
PFAM: transport system permease protein; KEGG: dde:Dde_1623 iron(III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.956
Xcel_2307
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_3521 ABC transporter related.
 
 
 0.915
Xcel_2760
PFAM: transport system permease protein; KEGG: rce:RC1_3860 hemin transport system permease protein HmuU, putative; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.868
Xcel_2172
PFAM: transport system permease protein; KEGG: oan:Oant_4083 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.855
Xcel_1450
PFAM: transport system permease protein; KEGG: pfl:PFL_3624 ferric vibriobactin ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.847
Xcel_3054
PFAM: transport system permease protein; KEGG: bvi:Bcep1808_1581 iron-hydroxamate transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.806
Xcel_2174
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3413 ABC Fe+3-siderophore transporter, ATPase subunit.
 
 
 0.761
Xcel_3056
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ABC transporter related; K02013 iron complex transport system ATP-binding protein.
 
 
 0.753
Xcel_1448
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_3149 ABC transporter related.
  
 
 0.722
Xcel_2308
PFAM: protein of unknown function DUF1684; KEGG: ade:Adeh_0091 hypothetical protein.
       0.701
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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