STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2312Transcriptional modulator of MazE/toxin, MazF; Toxic component of a type II toxin-antitoxin (TA) system. (117 aa)    
Predicted Functional Partners:
Xcel_2313
Hypothetical protein.
 
 
 
 0.979
vapC-9
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
   
 0.518
Xcel_1527
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; DNA polymerase beta domain protein region; SMART: helix-turn-helix domain protein; KEGG: xfn:XfasM23_1812 DNA polymerase beta subunit.
 
   
 0.486
Xcel_0287
PFAM: helix-turn-helix HxlR type; KEGG: gur:Gura_3513 HxlR family transcriptional regulator.
   
    0.452
Xcel_2311
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: azc:AZC_1286 hypothetical protein.
   
    0.452
Xcel_3335
PFAM: helix-turn-helix HxlR type; KEGG: azo:azo3515 putative transcriptional regulatory protein.
   
    0.452
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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