STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2320PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: scl:sce3237 phospholipase D/transphosphatidylase. (241 aa)    
Predicted Functional Partners:
Xcel_2321
KEGG: ajs:Ajs_2204 hypothetical protein.
       0.802
Xcel_2322
PFAM: helicase domain protein; SMART: helicase domain protein; KEGG: bpl:BURPS1106A_3675 helicase, C-terminal.
       0.802
Xcel_2323
KEGG: sfu:Sfum_3847 hypothetical protein.
       0.802
Xcel_2324
PFAM: helicase domain protein; SNF2-related protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: bps:BPSL0763 putative helicase SNF2 family protein.
       0.790
Xcel_1362
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: ade:Adeh_0847 SUF system FeS assembly protein.
   
 
 0.639
Xcel_2325
KEGG: eba:ebA284 hypothetical protein.
       0.568
Xcel_2210
TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: scl:sce8316 competence protein.
   
 
 0.402
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.