STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2336PFAM: TrwC relaxase; KEGG: tbd:Tbd_1686 putative ATP-dependent exoDNAse (exonuclease V) alpha subunit. (1176 aa)    
Predicted Functional Partners:
Xcel_0786
PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative.
  
 
 0.900
Xcel_0805
Type IV secretory pathway VirB4 protein-like protein; KEGG: rle:pRL70152 putative crown gall-like type IV secretion system protein.
 
   
 0.802
Xcel_0800
Type IV secretory pathway VirD4 protein-like protein; KEGG: atc:AGR_L_58 component of type IV secretion system.
 
   
 0.794
Xcel_0829
PFAM: Bifunctional DNA primase/polymerase; KEGG: mno:Mnod_2621 bifunctional DNA primase/polymerase.
  
   
 0.794
Xcel_1575
KEGG: bxe:Bxe_A1764 putative type IV secretory pathway protein VirD4.
 
   
 0.794
Xcel_2343
KEGG: bxe:Bxe_A1764 putative type IV secretory pathway protein VirD4.
 
   
 0.794
Xcel_0826
PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: nse:NSE_0001 ParB family chromosome partitioning protein.
 
  
 0.793
Xcel_0802
KEGG: baa:BXB0111 hypothetical protein.
 
     0.783
Xcel_0780
PFAM: UvrD/REP helicase; KEGG: acr:Acry_0218 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
 
 0.776
Xcel_0819
Hypothetical protein.
  
     0.774
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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