STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2340PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: kpn:KPN_02069 L, D-carboxypeptidase A (in murein recycling). (306 aa)    
Predicted Functional Partners:
Xcel_3337
PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: bcz:BCZK2964 microcin C7 self-immunity protein.
  
     0.502
Xcel_3015
PFAM: GCN5-related N-acetyltransferase; KEGG: bvi:Bcep1808_3667 GCN5-related N- acetyltransferase.
  
    0.488
Xcel_2257
TIGRFAM: M6 family metalloprotease domain protein; PFAM: peptidase M6 immune inhibitor A; KEGG: ade:Adeh_0322 peptidase M6, immune inhibitor A.
  
     0.472
Xcel_2341
Hypothetical protein.
       0.400
Xcel_2342
Hypothetical protein.
       0.400
Xcel_2343
KEGG: bxe:Bxe_A1764 putative type IV secretory pathway protein VirD4.
       0.400
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.