STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2351PFAM: integrase family protein; KEGG: afw:Anae109_2797 phage integrase family protein; Belongs to the 'phage' integrase family. (427 aa)    
Predicted Functional Partners:
Xcel_2770
PFAM: metallophosphoesterase; KEGG: afw:Anae109_3838 metallophosphoesterase.
  
     0.491
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.470
Xcel_0968
PFAM: Prephenate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP- glucose/GDP-mannose dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: hha:Hhal_0566 prephenate dehydrogenase.
  
    0.461
Xcel_2352
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; HI0933 family protein; KEGG: mlo:mlr0388 dihydrolipoamide dehydrogenase.
       0.455
Xcel_1305
KEGG: maq:Maqu_0559 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase.
  
  
 0.454
Xcel_1024
PFAM: protein of unknown function DUF159; KEGG: rru:Rru_A3713 hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.443
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
   
    0.443
Xcel_1569
PFAM: integrase family protein; KEGG: bcy:Bcer98_2627 phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.436
Xcel_2508
KEGG: hha:Hhal_0964 competence protein F.
   
    0.433
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.