STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2396PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_2511 acetyltransferase. (193 aa)    
Predicted Functional Partners:
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
      0.900
Xcel_0300
PFAM: phosphate transporter; KEGG: gme:Gmet_3131 phosphate transporter.
 
  
 0.592
Xcel_0111
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mlo:mll2156 hypothetical protein.
  
    0.526
Xcel_2839
PFAM: OsmC family protein; KEGG: sme:SM_b21303 hypothetical protein.
 
     0.431
Xcel_0986
PFAM: ribonuclease BN; KEGG: mpt:Mpe_A0042 BrkB-like serum-resistance protein.
  
     0.400
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.