STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2402PFAM: ROK family protein; KEGG: vei:Veis_3275 ROK family protein. (392 aa)    
Predicted Functional Partners:
Xcel_2397
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: vei:Veis_3268 xylose isomerase domain protein TIM barrel.
 
     0.699
Xcel_2398
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bha:BH0710 hypothetical protein.
 
     0.589
Xcel_2399
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mll1012 periplasmic ribose-binding protein.
 
    0.580
Xcel_2401
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bch:Bcen2424_5039 ABC transporter related.
      0.564
Xcel_2400
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bvi:Bcep1808_1507 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
    0.560
Xcel_1099
PFAM: phosphotransferase system PTS EIIB protein; KEGG: bmj:BMULJ_02774 PTS system N- acetylglucosamine-specific IIB component.
  
 
 0.500
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.