STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2416PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: GK17577 gene product from transcript GK17577- RA. (603 aa)    
Predicted Functional Partners:
Xcel_0875
KEGG: rfr:Rfer_0173 hypothetical protein.
  
     0.662
Xcel_1142
TIGRFAM: HhH-GPD family protein; PFAM: HhH-GPD family protein.
  
     0.554
Xcel_1410
KEGG: mxa:MXAN_5528 hypothetical protein.
  
     0.547
Xcel_2414
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: mlo:mll5046 putative FAD-binding dehydrogenase.
       0.486
Xcel_2415
PFAM: GCN5-related N-acetyltransferase; KEGG: scl:sce8211 adenylattransferase.
       0.486
Xcel_1439
KEGG: scl:sce9075 hypothetical protein.
  
   
 0.462
glgE
Alpha amylase catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
       0.456
Xcel_2418
KEGG: mxa:MXAN_3684 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
       0.456
Xcel_2419
PFAM: aminoglycoside phosphotransferase; KEGG: bpt:Bpet2370 hypothetical protein.
       0.456
Xcel_1440
KEGG: azo:azo3956 hypothetical protein.
  
    0.443
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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