STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2423Hypothetical protein; KEGG: vco:VC0395_A1354 HlyD family secretion protein. (343 aa)    
Predicted Functional Partners:
Xcel_2424
KEGG: similar to hedgehog protein.
     0.955
Xcel_2422
PFAM: Tetratricopeptide TPR_2 repeat protein; Thioredoxin domain; KEGG: trx; thioredoxin; K05838 putative thioredoxin.
 
     0.787
Xcel_2942
Hypothetical protein; KEGG: mgm:Mmc1_2179 putative outer membrane adhesin like proteiin.
  
     0.767
Xcel_1186
Hypothetical protein.
  
     0.756
Xcel_0010
KEGG: Hypothetical protein CBG04830.
  
     0.723
Xcel_3007
KEGG: fibrocystin-L-like protein.
  
     0.686
Xcel_2425
KEGG: hypothetical protein; K03497 chromosome partitioning protein, ParB family.
 
     0.680
Xcel_2947
PFAM: DSBA oxidoreductase.
  
     0.671
Xcel_1277
Hypothetical protein.
  
     0.663
Xcel_3364
Hypothetical protein; KEGG: GH15499 gene product from transcript GH15499- RA.
  
     0.646
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.