STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2427Hydrolase of the alpha/beta superfamily-like protein; KEGG: cbd:CBUD_0236 alpha/beta hydrolase. (261 aa)    
Predicted Functional Partners:
Xcel_2428
Hypothetical protein.
 
     0.851
Xcel_2426
PFAM: alpha/beta hydrolase fold; KEGG: gur:Gura_0572 alpha/beta hydrolase fold.
       0.693
Xcel_0387
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: acr:Acry_1500 hypothetical protein.
  
     0.653
Xcel_0924
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pzu:PHZ_c3209 predicted transcriptional regulator.
  
     0.646
Xcel_1993
Hypothetical protein; KEGG: acp:A2cp1_0462 exonuclease SbcC.
  
     0.550
Xcel_2429
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: scl:sce7544 hypothetical protein.
       0.550
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.491
Xcel_0327
Hypothetical protein.
  
     0.438
Xcel_0736
KEGG: bch:Bcen2424_6766 PE-PGRS family protein.
  
     0.413
Xcel_0173
PFAM: protein of unknown function DUF742.
  
     0.402
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.