STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2428Hypothetical protein. (99 aa)    
Predicted Functional Partners:
Xcel_2427
Hydrolase of the alpha/beta superfamily-like protein; KEGG: cbd:CBUD_0236 alpha/beta hydrolase.
 
     0.851
Xcel_2446
Hypothetical protein.
 
   
 0.744
Xcel_2426
PFAM: alpha/beta hydrolase fold; KEGG: gur:Gura_0572 alpha/beta hydrolase fold.
       0.692
nucS
Protein of unknown function DUF91; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
     
 0.661
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.557
Xcel_2429
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: scl:sce7544 hypothetical protein.
       0.550
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.520
Xcel_3360
PFAM: major facilitator superfamily MFS_1; KEGG: gsu:GSU0752 transporter, putative.
  
    0.492
Xcel_1223
PFAM: GCN5-related N-acetyltransferase; KEGG: mms:mma_0832 acetyltransferase.
  
     0.460
Xcel_2491
TIGRFAM: anti-sigma factor; KEGG: mxa:MXAN_6460 hypothetical protein.
 
   0.447
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.