STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2482PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: hypothetical protein. (447 aa)    
Predicted Functional Partners:
Xcel_0173
PFAM: protein of unknown function DUF742.
  
     0.586
Xcel_1087
KEGG: hha:Hhal_1735 putative ABC transporter.
  
     0.569
Xcel_1086
Hypothetical protein; KEGG: hha:Hhal_1736 putative ABC transporter.
  
     0.544
Xcel_0171
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: GH10507 gene product from transcript GH10507- RA.
  
     0.530
Xcel_1537
Hypothetical protein.
  
     0.475
Xcel_1721
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: bcz:BCZK2266 D-alanyl-D-alanine carboxypeptidase.
  
     0.470
Xcel_1535
Hypothetical protein.
  
     0.466
Xcel_2483
PFAM: protein of unknown function DUF21; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: conserved hypothetical protein, putative efflux protein (DUF21 domain protein).
       0.443
Xcel_2484
PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: mxa:MXAN_4903 putative transporter.
       0.438
Xcel_1406
Hypothetical protein.
  
     0.430
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.