STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2484PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: mxa:MXAN_4903 putative transporter. (442 aa)    
Predicted Functional Partners:
Xcel_2483
PFAM: protein of unknown function DUF21; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: conserved hypothetical protein, putative efflux protein (DUF21 domain protein).
 
   
0.913
Xcel_2794
PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: pde:Pden_3114 protein of unknown function DUF21.
 
   
0.637
Xcel_2485
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: lch:Lcho_2476 two component transcriptional regulator.
  
    0.544
Xcel_2486
KEGG: lch:Lcho_2475 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein.
       0.529
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
    0.440
Xcel_2482
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: hypothetical protein.
       0.438
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.