STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2489PFAM: Aldose 1-epimerase; KEGG: esa:ESA_04055 hypothetical protein. (308 aa)    
Predicted Functional Partners:
Xcel_0758
TIGRFAM: galactokinase; PFAM: GHMP kinase domain protein; GHMP kinase; KEGG: aba:Acid345_1701 galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
  
 0.982
Xcel_0920
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich; KEGG: bha:BH2723 beta-galactosidase.
  
 
 0.921
Xcel_1193
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bha:BH3701 beta-galactosidase.
  
 
 0.912
Xcel_2151
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bha:BH3701 beta-galactosidase.
  
 
 0.912
Xcel_0657
PFAM: ROK family protein; KEGG: afw:Anae109_4035 ROK family protein.
    
 0.906
Xcel_1048
PFAM: ROK family protein; KEGG: glo:Glov_1263 ROK family protein.
    
 0.906
Xcel_2002
TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; KEGG: mlo:mlr7234 glucose kinase.
    
 0.906
Xcel_2049
PFAM: ROK family protein; KEGG: asa:ASA_3376 ROK family protein.
    
 0.906
Xcel_2121
PFAM: ROK family protein; KEGG: gur:Gura_2075 ROK family protein.
    
 0.906
Xcel_0260
PFAM: glycoside hydrolase clan GH-D; KEGG: esa:ESA_03854 hypothetical protein.
  
 
  0.905
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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