STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2498TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: bsu:BSU17570 H+-symporter. (480 aa)    
Predicted Functional Partners:
Xcel_1323
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: cja:CJA_3070 beta-xylosidase/alpha-L- arabinfuranosidase, putative, gly43G; Belongs to the glycosyl hydrolase 43 family.
  
 0.801
Xcel_2497
KEGG: Os02g0711100; hypothetical protein.
       0.697
Xcel_0920
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich; KEGG: bha:BH2723 beta-galactosidase.
 
  
 0.686
Xcel_1194
PFAM: glycoside hydrolase family 31; KEGG: esa:ESA_04154 alpha-xylosidase YicI; Belongs to the glycosyl hydrolase 31 family.
  
 0.578
Xcel_0758
TIGRFAM: galactokinase; PFAM: GHMP kinase domain protein; GHMP kinase; KEGG: aba:Acid345_1701 galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.526
Xcel_2499
Hypothetical protein; KEGG: GK23094 gene product from transcript GK23094- RA.
       0.519
Xcel_2500
Hypothetical protein.
       0.519
Xcel_2665
PFAM: glycoside hydrolase family 35; KEGG: ccs:CCNA_02891 beta-galactosidase.
 
  
 0.463
Xcel_2405
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: apa:APP7_1068 alcohol dehydrogenase / acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.442
Xcel_2650
PFAM: Glucuronate isomerase; KEGG: rsh:Rsph17029_2139 glucuronate isomerase.
 
   
 0.425
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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